fixes and refactor

app/main.py

@@ -9,6 +9,9 @@ from fastapi.middleware.cors import CORSMiddleware
 
 from app.config import settings
 from app.database.base import engine
+from app.database.fts import ensure_rolodex_fts, ensure_files_fts, ensure_ledger_fts, ensure_qdros_fts
+from app.database.indexes import ensure_secondary_indexes
+from app.database.schema_updates import ensure_schema_updates
 from app.models import BaseModel
 from app.models.user import User
 from app.auth.security import get_admin_user
@@ -24,6 +27,21 @@ logger = get_logger("main")
 logger.info("Creating database tables")
 BaseModel.metadata.create_all(bind=engine)
 
+# Initialize SQLite FTS (if available)
+logger.info("Initializing FTS (if available)")
+ensure_rolodex_fts(engine)
+ensure_files_fts(engine)
+ensure_ledger_fts(engine)
+ensure_qdros_fts(engine)
+
+# Ensure helpful secondary indexes
+logger.info("Ensuring secondary indexes (status, type, employee, etc.)")
+ensure_secondary_indexes(engine)
+
+# Ensure idempotent schema updates for added columns
+logger.info("Ensuring schema updates (new columns)")
+ensure_schema_updates(engine)
+
 # Initialize FastAPI app
 logger.info("Initializing FastAPI application", version=settings.app_version, debug=settings.debug)
 app = FastAPI(
@@ -71,6 +89,7 @@ from app.api.import_data import router as import_router
 from app.api.flexible import router as flexible_router
 from app.api.support import router as support_router
 from app.api.settings import router as settings_router
+from app.api.mortality import router as mortality_router
 
 logger.info("Including API routers")
 app.include_router(auth_router, prefix="/api/auth", tags=["authentication"])
@@ -84,6 +103,7 @@ app.include_router(import_router, prefix="/api/import", tags=["import"])
 app.include_router(support_router, prefix="/api/support", tags=["support"])
 app.include_router(settings_router, prefix="/api/settings", tags=["settings"])
 app.include_router(flexible_router, prefix="/api")
+app.include_router(mortality_router, prefix="/api/mortality", tags=["mortality"])
 
 
 @app.get("/", response_class=HTMLResponse)